Package: celltrackR
Type: Package
Title: Motion Trajectory Analysis
Date: 2025-09-19
Version: 1.2.2
Authors@R: c(person("Johannes", "Textor", role = c("aut","cre"),
                     email = "johannes.textor@gmx.de"),
              person("Katharina", "Dannenberg", role = "aut"),
              person("Jeffrey", "Berry", role = "aut" ),
              person("Gerhard", "Burger", role = "aut"),
              person("Annie","Liu", role= "aut"),
              person("Mark","Miller", role= "aut"),
              person("Inge", "Wortel", role = c("aut"),
                     email = "ingewortel@gmail.com"))
Author: Johannes Textor [aut, cre], Katharina Dannenberg [aut], Jeffrey
        Berry [aut], Gerhard Burger [aut], Annie Liu [aut], Mark Miller
        [aut], Inge Wortel [aut]
Maintainer: Johannes Textor <johannes.textor@gmx.de>
Description: Methods for analyzing (cell) motion in two or three
        dimensions. Available measures include displacement,
        confinement ratio, autocorrelation, straightness, turning
        angle, and fractal dimension. Measures can be applied to entire
        tracks, steps, or subtracks with varying length. While the
        methodology has been developed for cell trajectory analysis, it
        is applicable to anything that moves including animals, people,
        or vehicles. Some of the methodology implemented in this
        packages was described by: Beauchemin, Dixit, and Perelson
        (2007) <doi:10.4049/jimmunol.178.9.5505>, Beltman, Maree, and
        de Boer (2009) <doi:10.1038/nri2638>, Gneiting and Schlather
        (2004) <doi:10.1137/S0036144501394387>, Mokhtari, Mech,
        Zitzmann, Hasenberg, Gunzer, and Figge (2013)
        <doi:10.1371/journal.pone.0080808>, Moreau, Lemaitre, Terriac,
        Azar, Piel, Lennon-Dumenil, and Bousso (2012)
        <doi:10.1016/j.immuni.2012.05.014>, Textor, Peixoto,
        Henrickson, Sinn, von Andrian, and Westermann (2011)
        <doi:10.1073/pnas.1102288108>, Textor, Sinn, and de Boer (2013)
        <doi:10.1186/1471-2105-14-S6-S10>, Textor, Henrickson, Mandl,
        von Andrian, Westermann, de Boer, and Beltman (2014)
        <doi:10.1371/journal.pcbi.1003752>.
Depends: R (>= 3.5.0)
License: GPL-2
Encoding: UTF-8
LazyData: true
URL: http://www.motilitylab.net
Imports: stats, grDevices, graphics, utils, ellipse, pracma, methods
Suggests: scatterplot3d, fractaldim, testthat, wordspace, knitr,
        rmarkdown, RSpectra, uwot, dendextend, ggplot2, ggbeeswarm,
        gridExtra, mvtnorm, jsonlite, httr, curl
RoxygenNote: 7.3.2
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2026-06-17 09:23:55 UTC; root
Repository: https://jtextor.r-universe.dev
Date/Publication: 2025-09-19 18:41:59 UTC
RemoteUrl: https://github.com/cran/celltrackR
RemoteRef: HEAD
RemoteSha: 379bad2db51cb9c327985689767d0c3636a9bdce